From: Jurgen F. Doreleijers (jurgen@bmrb.wisc.edu)
Date: Mon Oct 07 2002 - 17:31:31 CDT
Dear subscriber to the BMRB mailing list,
The NMR experimental data of 1300+ entries that has been deposited with the
PDB over many years has been classified and parsed by the BMRB staff. The
data are available from a versatile query client (see example questions
below) in both the original raw deposited format and in a developmental
NMR-STAR format for the most common data types and programs. The intention
of the BMRB staff is to review the current proposal for the NMR-STAR format
of (ambiguous) distance restraints and your input would be highly valued.
Example queries (explained in the 'how to' of the query interface):
Get all PDB entry codes containing a certain type (e.g. RDCs) of data and
then get the raw (original/deposited) data.
Get all STAR formatted data with one file for each PDB entry.
Get an overview of all data available from one PDB entry (e.g. 1CJG) and
then save the raw data for the hydrogen bond distance constraints.
Please refer to the following manuscript if this work was useful to you:
J. F. Doreleijers, S. Mading, D. Maziuk, K. Sojourner, L Yin, J. Zhu, E. L.
Ulrich, and J. L. Markley. A database of all the experimental NMR constraint
sets publicly available for 1000+ biological systems. In preparation, 2002.
The query interface is available at the BMRB site: http://www.bmrb.wisc.edu.
Select "Features" in the left panel and in the main panel of the resulting
page select "NMR restraints from PDB MR files" under "Data Access".
Please send me your suggestions and,
have fun,
Jurgen Doreleijers
--- Jurgen F. Doreleijers, Ph.D. BioMagResBank, Univ. of Wisconsin-Madison, WI, USA mailto:jurgen@bmrb.wisc.edu*** Details on how to be removed from this list as well as an *** *** archive of recent postings are available at *** *** http://www.bmrb.wisc.edu/maillist ***
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